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… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … the field, and it’s a little hard to find in print, but we live in the information age and the ebook version is … metabolites come from reactions, of enzymes and sometimes those are referred to as “small molecules” because …

… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … for one, not being in an operon. And I still too many times when I’m at a mixed conference like here, where you – … this, is that I don’t have an awareness of how to go about studying them. Like to me, fungi are, you know, how do you …

… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … each other with hammers. [LAUGHTER] DAN: That happens sometimes too. But it’s not as bad as it used to be. [LAUGHTER] …

… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … I wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, though … a subset of molecules that will fly on an analytical instrument and be detected. Dan Udwary: You’re making me so …

… to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource … the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …

… which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular … An assay used for profiling transcription factor binding sites across entire genomes. This … high-throughput processing of samples in 96-well plates on automated liquid handler platforms, substantially …

… One of the JGI’s key assets is our user community, … who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life …

… The Micro-Scale Applications group explores the genetic makeup of natural microbial … the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … internal analytical standards to accurately measure environmental microbiome activity levels.This functional assay …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …

… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser … natural products science as a field, we have arguably been studying microbial natural products in an ordered way for … technology and the improvement in sensitivity of those instruments. And that’s been followed by developments in pulse …

… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … do the sampling that they propose? And go to these, sometimes, pretty elaborate places where you need sampling …