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Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … is here ) so you understand what’s happened so far in the conversation between me and Alison. In the previous episodes … recommend David Hopwood’s book called  “Streptomyces in Nature and Medicine.” It’s obviously focused more on the …

… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … we also have a lot of analysis pipelines, be it for, again, metagenome, metatranscriptomes for SNP analysis if somebody …

… about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to … the chemicals that make species unique and different from one another. They are incredibly important to medicine, the …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their … composition, metabolic similarity & compatibility, and signatures of horizontal gene transfer. … The SMC provides …

… and environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen … materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy …

… metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and … communities, and samples including state-of-the-art instrumentation and informatic approaches.By bridging genomics … health, and bioenergy development. … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions …

… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … supports the development of next-generation biofuels by studying perennial grasses and fast-growing trees as … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

… … Information on Software Looking for information on our software, including BBTools ? Click to find that on …

… to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource … the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. …

The Micro-Scale Applications group explores the genetic makeup of natural microbial … the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI …