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Plant-Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial …
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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … supports the development of next-generation biofuels by studying perennial grasses and fast-growing trees as … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …
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Prokaryote Program User Advisory Committee
… is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee … is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the …
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Natural Prodcast Episode 16: Marcy Balunas
… … DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … now?  MARCY: Sure. So my lab has really converged on the study of host-microbe chemistry. And the interactions– As … Marcy. So I was wondering, how did you get interested in studying natural products?  MARCY: That is a great question …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   … categories: Sequencing, Synthesis and Metabolomics. Strong internal collaborations with  Science Programs and  Operations enable the JGI to …
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Zhong Wang
… analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … was responsible for the terabase scale data analysis in the cow rumen and sheep rumen metagenome projects. Standing at the …
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Special Initiatives & Programs
Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … high-yielding feedstock plants, using advanced genetic technology to accelerate the domestication of perennials. … with existing transportation fuels. Researchers also study ways to develop valuable byproducts from lignin left …
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Informatics Advisory Committee
IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) activities and strategic plan. The IAC …
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Programs & Platform Leads
Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and biogeochemistry. In … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript … sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation …
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Building on basic metagenomics with complementary technologies
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Natural Prodcast Episode 5: Brad Moore
Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … So like, as an undergraduate, I was like, no, I’m going to study architecture. I like making things and designing … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …
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