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DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … for bioenergy and bioproduct applications. The program has completed over 70 projects, including gene synthesis, … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … and the stabilized isotope probing work that we’re doing, single cell work we’re doing. And using these together along … that’s your turf.  NIGEL MOUNCEY: Yeah, great.  DAN: And completely free, right?  NIGEL MOUNCEY: It is completely …

… by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for … will generate an email that will go to an administrator to complete the process. … Guidelines detailing the quantity … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …

… prefers to be known among friends in natural products. He’s from Langebio in Irapuato, Mexico, and an incredibly bright … If we are only interested in that final product, which is completely potent and specific to the target we’re thinking … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature …

Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … why we had the idea that the microviridins also could be completely different compounds. But that got at the idea …

… in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence … something like soil, which I’m working on now, this is a complete black box, we’re talking many, many orders of …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … novelties and expansions.  … The SMC provides complete sequence and annotation data for secondary …

… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool meraculous. …

Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically … based on scientific need. Proposals are considered complete when all agreed-upon projects are complete. This … to the 2-year use-restriction policy as described here. No single project has data under both use-restriction and …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …