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… Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us genome miners get really jazzed about finding enzymes that … associated with the chemistry department as well as the life sciences department. So welcome, Alison to today’s …

… Novel approaches are being explored to predict microbial lifestyles using AI-driven analysis of such datasets. The … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating these … areas that are less of a focus, I would say. For example, marine research is not so much of a focus within BER …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … we talked about sponges, go pull a sponge or extract some tree bark. And so you’re just taking something, you’re … possible to do something that the field refers to as “genome mining”. So, if you can sequence the DNA and actually …

… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were 120 principal … Filling in the Plant Tree of Life …

… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotech. 37, 29–37. …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and … The NMDC is tackling existing gaps in microbiome science through distributed data …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial communities, and …

… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …

… science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …