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Microbial Program
… soil health, carbon sequestration and bioeconomy applications. The program provides high-quality, large-scale … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …
Learn more
Viral Genomics Group
… for uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group Lead:  …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… talking about you, because you’ve been on a couple of the podcasts now that we’ve put out. And I gave you a little … our longevity and agriculture. And there’s so many applications. So it was really the draw for that as well. DAN … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists outside of … the word by leaving a review of Natural Prodcast on Apple podcasts, Google, Spotify, or wherever you got the podcast. …
Learn more
Secondary Metabolites Program
… often involved in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and … secondary metabolites, expanding their potential applications in the bioeconomy including biofuels, biochemicals … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … enriched with functional annotation, taxonomic classification, and microbial host predictions.  … The Mycocosm web …
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CSP Functional Genomics
… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …
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IMG Group
… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this …
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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … organisms, in which case you get to go to exotic tropical locations and go snorkeling and scuba diving. And when my … that if you looked at the grant applications for the last 40 years for studying biosynthetic pathways, all of them …
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Natural Prodcast Episode 9: Roger Linington
… in British Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists outside of …
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Natural Prodcast Episode 22: Alison Narayan
… and describes her work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … library within that family as possible. There’s one more category of sequences that we worked with JGI on, and those …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … group . Research Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . … metagenome workflow . mSystems 6(3). 10.1128/MSYSTEMS.00804-20 Nayfach S et al.  A Genomic Catalog of Earth’s …
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