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… there’s ones related to antibiotics that’s obviously a big question, and how you can start defining that type of … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature …

… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … to the marine environment, looking at more like holistic or big picture view, if we’re still around in a decade. We have … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …

Oceanography. And as I say to people, I just kind of did a big circle of North America. So then I came back and I … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for …

… genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural product … yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … those kinds of things into the lab. DAN UDWARY: Were you a big diver at the time? BILL FENICAL: I had begun diving when … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed phages be?  Nature Reviews …

… to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for …

… and symbiotic relationships. If you think you have a big idea that fits within our mission, we’re happy to help … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating …

… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … use statistical analysis to prioritize both to analyze our bigger system questions as well as to prioritize which …

… ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to all these meetings on microbiomes …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …