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… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … to the marine environment, looking at more like holistic or big picture view, if we’re still around in a decade. We have … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …

… local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … those kinds of things into the lab. DAN UDWARY: Were you a big diver at the time? BILL FENICAL: I had begun diving when … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

… and symbiotic relationships. If you think you have a big idea that fits within our mission, we’re happy to help … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating …

… Oceanography. And as I say to people, I just kind of did a big circle of North America. So then I came back and I … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of …

… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … use statistical analysis to prioritize both to analyze our bigger system questions as well as to prioritize which …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… and Materials (CMM): Genomic studies of microbial and plant metabolism reveal biological routes to recover, reuse, … Enhancing agriculture: JGI users explore beneficial plant–microbe interactions and nutrient cycling to enhance … or aquaculture, and related production systems.  Invasive plant species; and first-generation biofuel targets (i.e. …

… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …

… chemicals that are coming out of organisms, whether it be a plant or from the bottom of the ocean, from a sponge, or a … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . … four double bonds in this one region of the molecule.  Dan: Big, complex molecule.  Brad: It was a complex chemical. …

… there’s ones related to antibiotics that’s obviously a big question, and how you can start defining that type of … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature …

… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … top of this photograph, or one corner of it, you see this big white blob – sort of overexposed – but this this white …