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Natural Prodcast Episode 12: Nadine Ziemert
… biology of these compounds. And they saw the tree, and I explained to them how I would interpret it. And then he’s … have, right? He was looking for a postdoc and just wrote an email to everyone. And I’m like, oh, I’m looking for … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like …
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Products
… (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in … verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene or multiple small genes assembled totaling …
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JGI Portals
… host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced … … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the modern …
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CSP New Investigator Call
… for this call may be submitted at any time as brief white papers. Applicants may submit up to two proposals per … and track record of the applicant.  Learn about the general review process or get details on the internal … processing. … Review Process … Sample Requirements … For general questions, please reach out to Christa Pennacchio, …
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Natural Prodcast Episode 6: Marc Chevrette
… that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … symbiont, a microbe, that produces antibiotic chemistry to protect the crop that the ants grow. So it’s a cool … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as friends …
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Natural Prodcast Episode 22: Alison Narayan
… do engineering to improve the physical properties of a protein and make it easier to work with. But sometimes, what … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: … Yeah, maybe in the future chemists will have DNA synthesizers on their bench, and they can just make the DNA and do …
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Natural Prodcast Episode 3: The Primer, Part 3
DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you recognize … been shared for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise … or an enhancer, an activator, to go ahead and, and synthesize those genes within a model organism like E.coli , and …
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Natural Prodcast Episode 1: The Primer, Part 1
… natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your … ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we didn’t get into secondary … actually a very large molecule. Very complicated to synthesize. And so synthesis wasn’t really possible. Eventually, …
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Doubling Down on Known Protein Families
… to better understand microbial communities by looking at protein function within them. The work was led by a team of … sequencing allows researchers to study the entire genetic makeup of these communities via whole genome … or habitats that align very well, randomly,” Kyrpides explained. “Replicating that 100 times would have been …
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Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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