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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI … the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate …
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IMG Group
… group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and … mis-assignment of species names in genomes spanning nearly 18% of all existing species. Additionally, the complete … datasets sequenced at the JGI. IMG/M is also open to scientists worldwide for the annotation, analysis, and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the … limited experience with, and to do so with some of the top scientists in that subfield.     Byline: Graham Rutherford …
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Metagenome Program
… and metabolic potential, with implications for energy production, environmental sustainability, and many other … integrated context.  … The IMG/VR system serves as a starting point for the analysis of viral genome fragments … … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
In this short video, UC Merced undergraduate and graduate students share how their … experience.  Nathaniel Brown : My biggest concern before I started my internship was whether I had enough experience to …
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JGI Portals
… all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for … metagenomes, and metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, … a place where the community can upload new data for use by scientists and the public, and provide programmatic access …
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Natural Prodcast Episode 17: Cassandra Quave
… has done. And so hi, Cassandra, welcome. And I just want to start out with you have done so much, and you wear so many … on or the products you’re developing are being worked on or accessed under the principles of access and benefit sharing. … I think this is something I’d love more natural products scientists to think about, because if you look at the 36 …
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Community Science Program
… (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be …
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Natural Prodcast Episode 4: Nancy Keller
… “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to … on to talk about fungal natural products. I can say that I started in fungal natural products – I did my Ph.D. with … not that hard. I mean, technically, you know, it’s not very accessible.    NANCY: They’re not at all. It’s not. It’s …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …
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Natural Prodcast Episode 16: Marcy Balunas
… off between my undergrad and my masters, but I ended up starting a master’s in plant ecology. And that masters … of my collaborators Spencer Nyholm has been working on the accessory nidamental gland or ANMG. And the ANMG is a second … different places. It’s interesting how much of our lives as scientists revolve around our science but then also about …
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How to Submit Sequencing Samples
… for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors of a …
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