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… episode 12 of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in … Like me, she’s a genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found her … reports on the evolution of genome mining and microbes with Mohammad Alanjary and Tilmann Weber to be a really …

… pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen University in the … . So this is an algorithm that identifies, using machine learning models, that very tiny precursor peptide, encoding … all based on antiSMASH results. And so if you want to do deeper analysis on things, then you’re staying in the “BiG” …

… genomes and directly link functional information with individual cells. Research Team    … offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … and sequence microbial aggregates after first imaging with various microscopy techniques …

… ONGOING ONGOING CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …

… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. … frequencies will be specific to the environment.  Machine learning was also a large part of the creation of the tool. …

… in making this happen. We had a really fun conversation with Roger about all this, in terms of how to build an … It was designed to ensure equitable benefit sharing if any discoveries were made that were of value to the host … for Ray Andersen there, and had a very enjoyable time learning about natural products science. DAN:  Yeah, great. …

… have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI … The video complements a recently published paper with first author Amundson in the journal Microbiome . The …

… week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … being just so incredibly important to advancing these discoveries. The idea that something can go literally from … I think could be leveraged better could be perhaps to take deeper looks at the interactions that organisms have, not …

… a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. Check our … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and … The JGI Genome Portal was replaced with the Data Portal and sunset in 2026. The Genome Portal …

… been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental … and biosystems. It The program fosters collaboration with U.S. and international scientists to drive innovations that align with DOE's missions. …