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Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the … making publicly available use-restricted data. … Read about our policy on research data and analysis products …

… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a …

Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … deeply branching in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across … expressability: We are developing a Heterologous Expression Report Card toolkit (HERC-tk) to enable users to identify … and ever-improving, and to facilitate discussion and debate about the data. It is also a place where the community can …

… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … there are lots of evidence of evolution of BGCs, and you’ve reported on that, but what do you think about that? How much …

… science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope of … analysts and other technical experts Track, monitor and report analysis status to investigators Facilitate data … with DOE JGI Science Program leads Solicit user feedback about your overall experience working with the JGI. Find out …

Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the science and scientists of … natural products systems. This conversation came about because he challenged me on my use of the term “secondary … pathways with many, many enzymes, but even if people do not report back this these observations, most, if not all, of …

… you guys. Schedules are hard. But, I’m working on it because I really do want you all to hear this great conversation … stuff with cool bacteria that I’m fascinated to learn more about. He works with methylotrophs, which are a group of … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …

So we’ve got Kate here today, and we wanted to talk to her about a whole list of things. So we have a Scripps … and we want to talk about molecular networking, because I really enjoyed the review that you wrote with Marnix … able to, say, see biosynthetic pathways? Or can we see a progression in metabolites and metabolite families? Or are …

… we recorded in my hotel room at SIMB, or the Society for Industrial Microbiology conference that took place in January … this happen. We had a really fun conversation with Roger about all this, in terms of how to build an international … define standards for the minimum information that should be reported. And to develop a schema by which you can report …

Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and scientists of … and I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … not in this field either. So they used antiSMASH and they report findings using antiSMASH. And it’s actually quite a …

… and now COVID. We also wanted to talk to her because she’s written a book about her life and her science, called The Plant Hunter , … no way to be 100% sure that the chemistry that they’re even reporting on is from the plant they say they’re working on. …