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Natural Prodcast Episode 4: Nancy Keller
… first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … mostly coming out of China and India, very cheap for $100-$200. But you have so many contigs. This is a problem … Basidiomyetes might get to 50. Some of them go to over 100. There. That can be the problem. Whereas the bacteria, …
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Natural Prodcast Episode 11: Marnix Medema
… tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- actually, I’ve got the t-shirt on … is really happening, if people are really going to sequence 10 or 20 genomes at once then we really need to have … heard about biosynthetic gene clusters and it’s one of the 10 analysis that you do, then it’s very easy to think that, …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… people what that number is. BETSY PARKINSON: So micromolar, 10 to the negative 6th. Nanomolar, 10 to the negative 9th. Picomolar, 10 to the negative 12th. … about 140 unique cyclic peptides. And from that, about 130 of them were not previously known. DAN: Very cool. …
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Mining Metagenomes for Cas Proteins
… UC Berkeley news release  Smallest life forms have smallest working …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Natural Prodcast Episode 18: A CSP Primer
… proposals as well. I’ve been at the JGI for 20 years, and 10 of those years, I’ve been a project manager. MENAKA … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA … chance of getting approved because you requested only 100 kb versus 500 kb. In the lab, they’re going to do the …
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Natural Prodcast Episode 15: Katherine Duncan
… goal to have 1,000 women in the program over a span of 10 years. So typically about 80 to 100 women get selected each year as a cohort to experience … might have done the extraction at five days, seven days, 10 days. And suddenly, you’re then comparing a chemical …
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Complete genome sequence of the plant-associated Serratia plymuthica strain AS13
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Webinar: SIP technologies at EMSL and JGI
… for tracking N15? The example in the presentation was with C13.  A:  Yes, EMSL can look at N15 as well as C13 as well as other isotopes using the IRMS. It’s just a … quite have the spatial resolution at tens of microns or 100 microns, whatever you want to call it. But NanoSIMS can …
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Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha
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Draft Genome Sequences of 10 Strains of the Genus Exiguobacterium
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Tanja Woyke Elected to American Academy of Microbiology
… proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the phylogenetic … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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