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Natural Prodcast Episode 21: Elizabeth Parkinson
… people what that number is. BETSY PARKINSON: So micromolar, 10 to the negative 6th. Nanomolar, 10 to the negative 9th. … what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this … about 140 unique cyclic peptides. And from that, about 130 of them were not previously known. DAN: Very cool. …
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Mining Metagenomes for Cas Proteins
… UC Berkeley news release  Smallest life forms have smallest working …
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Natural Prodcast Episode 18: A CSP Primer
… proposals as well. I’ve been at the JGI for 20 years, and 10 of those years, I’ve been a project manager. MENAKA … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA … chance of getting approved because you requested only 100 kb versus 500 kb. In the lab, they’re going to do the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Natural Prodcast Episode 15: Katherine Duncan
… inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … goal to have 1,000 women in the program over a span of 10 years. So typically about 80 to 100 women get selected each year as a cohort to experience …
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Webinar: SIP technologies at EMSL and JGI
… for tracking N15? The example in the presentation was with C13.  A:  Yes, EMSL can look at N15 as well as C13 as well as … quite have the spatial resolution at tens of microns or 100 microns, whatever you want to call it. But NanoSIMS can … not mixing the tracer with the CO2 produced at the end. 10. Q:  Related to DNA-SIP, are there any special …
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Complete genome sequence of the plant-associated Serratia plymuthica strain AS13
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Natural Prodcast Episode 3: The Primer, Part 3
… the number was. But I want to say it was like less than 10. Since, you know, a recent decade.  DAN: I’m sure that’s … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the …
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Draft Genome Sequences of 10 Strains of the Genus Exiguobacterium
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Tanja Woyke Elected to American Academy of Microbiology
… proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the phylogenetic … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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A More Intuitive Phytozome Interface
… version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor … v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are …
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Natural Prodcast Episode 20: Brian Bachmann
… And I set that up. And we finally got that to work 10 years later. But in the meantime there, we had people … a teaspoon of soil from outside, you maybe have to do a 10,000-fold dilution to plate that out. The deeper you go in … at Scripps, I guess, 22 years ago. And it’s over 130 steps to make everninomicin. DAN UDWARY: Yeah, one of …
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