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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … lactone. So the other thing about that class is that in phase one of the project that we’re doing with JGI is we’re …
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DNA Synthesis Program
… analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and genome-centric … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …
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Natural Prodcast Episode 17: Cassandra Quave
… she has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Natural Prodcast Episode 3: The Primer, Part 3
C, and you’ve got a new molecule, right? And so if you have 1000 A’s and 1000 B’s and 1000 C’s, then if you’ve got a robot that can … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … spheroides . And that got me really interested in microbial gene regulation and some pathways. And I thought …
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Plant-Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the …
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Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
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Natural Prodcast Episode 7: Ben Shen
… well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural … of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the 40,000 from …
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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MycoCosm portal: gearing up for 1000 fungal genomes
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