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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple … the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Community Science Program
… aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under … The ranked proposal list, along with a recommendation from JGI management, is then forwarded to DOE for final …
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Defining a Pan-Genome for Antarctic Archaea
… adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … microbial pan-genome. Since these microbes thrive under extreme temperature and salinity conditions, understanding …
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Microbial species delineation using whole genome sequences
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Digging into Microbial Ecosystems Deep Underground
… at Colorado State University have many questions about the microbial communities deep underground, and before the … Molecular Science Laboratory (EMSL) at Pacific Northwest National Laboratory. Letters of Intent are due March 16, …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the … meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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Emiley Eloe-Fadrosh
… joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify … Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), to help drive … soil management practices. Read the full release from Anuvia  here .     … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Metagenomes from two microbial consortia associated with Santa Barbara seep oil
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