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A Step Toward Controlling Soybean Rust
… , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Jay Keasling
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … be activated in lab environments. CRAGE made some headway in overcoming this obstacle when it hit the scene in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … microplastics that might be added to the water along the way, impacting its quality and in turn affecting … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … Being able to do this was beneficial to her in multiple ways. “At Berkeley Lab, we have an established set of core …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … characterizing Ca. Thiomargarita magnifica has paved the way for multiple new research questions. Among them, is the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature Communication s. The team studied  …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … plans to pursue a STEM career? Working at JGI was a great way to gain experience in a non-academic research …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … JM and Merchant SS. (2014) Evolution of a plant- specific copper chaperone family for chloroplast copper homeostasis. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada …
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