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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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What Happens Underground Influences Global Nutrient Cycles
… user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have … mutant library in Chlamy, as the alga is colloquially known by researchers. A missing gene from this mutant library … can regulate photosynthesis under fluctuating environmental conditions. The team aims to functionally link gene families …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … a cell or tissue at a specific time or under specific conditions – in over a dozen plants. To learn more about the … difficult. Our Plant Gene Atlas resource addresses that by providing standardized experimental conditions, tissue …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … Additionally, 40 percent of the proposals were submitted by researchers who had not been a primary investigator on … millet, grown without fertilizer and under erratic rainfall conditions. To help mitigate drought, famers are growing …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … DNA sequences mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI … collected across various terrains, and microbial life adapted to extreme conditions studied through the Antarctic …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … any host will do. It must be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Who We Are
… user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences Area. The … and metabolomics through its data portals. Supported by the DOE Office of Science's Biological and Environmental …
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Honey Bee Gut Microbiota Divvy Up Dinner
… bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are … that pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in … are abundant in glycoside hydrolases, and are thus better adapted than  Gilliamella  to breaking down hemicellulose. …
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Products
… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all products are available …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow year-over-year on marginal soil and … research is also informing how these grasses have adapted to a range of climates and environments. The …
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Differences in crop bacterial community structure between hoatzins from different geographical locations
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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