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JGI announces first round of 2023 New Investigator awardees
… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the … of Jeremy’s group. It’s just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Learning to Look
… case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … enter and exit through the cell membrane without lysing the bacterial host. They can also influence their host’s growth …
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Eelgrass Proves to Be Much Younger Than We Thought
… duplication event — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in … US Department of Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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iPHoP: A Matchmaker for Phages and their Hosts
… For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses … to reliably match viruses with their archaea and bacteria hosts. The Impact Within the domains of archaea and …
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JGI Portals
… access to information regarding genome and metagenome sequencing projects, and their associated metadata, around … all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data …
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Ian Blaby
… worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of … site ties heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et … in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 …
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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DNA Synthesis Program
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … fungi, researchers identified novel interactions between bacteria and the fungi. The Impact Stable isotope probing is … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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