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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Hiroshi Otani
… in actinomycetes. He is particularly interested in understanding how, when and why microbes decide to produce … microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New … transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, 595-607. Otani, H., Lee, …
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First Monoploid Reference Sequence of Sugarcane
… benefits expected from a genome sequence are better understanding the roles of genes in traits such as sucrose accumulation and disease, as well as targeting genes to improve biomass and sugar yield for … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora said the work has “significantly advanced our understanding of 1 billion years of evolution in Kingdom … — from phylogenetic relationships to evolution of genomic mechanisms — resulting in the diversity of fungal phenotypes … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Tracing the Evolution of Shiitake Mushrooms
… hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution could … atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the … by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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Dan Rokhsar
… evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity of plants … towards the development of improved biofuel feedstocks and understanding and ultimately assisting the adaptation of … Publications … Selected Publications …
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Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
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Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Berkeley Lab.  Building on the momentum of a Memorandum of Understanding (MoU) signed between UDE and Berkeley Lab in … manner. These advancements allow controlled sample transport for mass spectrometry applications, for example, …
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A Grass Model to Help Improve Giant Miscanthus
… , another species of Miscanthus that was sequenced. Understanding the evolution of polyploidy, and how genomes … plant, the team identified genes that may regulate nutrient transport to and from the rhizome and contribute to the … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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