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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … factors that control how genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The … to conduct comparative analyses across the genomes of multiple species in a single experiment. “Effectively, you …
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MycoCosm Tutorial
… fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and …
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Brachypodium as an emerging model for cereal–pathogen interactions
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The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was demonstrated using a specific …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … microbes, hosts, and their environments could be applied to multiple research areas including agriculture, biofuels and … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the … genome science-based scientific research from a broad range of disciplines. Three calls fall under the umbrella of our … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with … The more the better. We want to put at least a microgram of DNA in the tube so you’d need at least 2 micrograms in …
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Disclaimer
… resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … neither the United States Government nor the University of California nor any of their employees, makes any …
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Mediation of plant–mycorrhizal interaction by a lectin receptor-like kinase
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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