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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked … newest 5-Year Strategic Plan: Beyond Basepairs — A Vision for Integrative and Collaborative Genome Science , the … user facilities including the Advanced Light Source, the Molecular Foundry, NERSC and ESnet, as well as externally to …
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Richard Fox
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a nanoscale research and knowledge-based … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and …
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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … B.S. in Chemical Engineering, University of California Santa Barbara Ph.D. in Chemistry and Biochemistry, … growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation. Science …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … DOE Bioenergy Research Centers (BRCs) have expanded the network of common gardens and are exploring improvements to …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It … in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … Scientists have tried to study cyclic di-GMP and cellular networks with fluorescent biosensors before, but such …
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A More Intuitive Phytozome Interface
… of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … attempted to make sure users will continue to have straightforward access to all the data in Phytozome v12, and that … Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual gene pages The …
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Understanding Wildfire Recovery, Starting in Soil
… The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes … Service, New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and inter-organismal interactions, which are critical for advancing sustainable solutions in agriculture, energy … to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing large …
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UC Merced Interns Reflect on Their JGI Summer Projects
… and develop presentation skills as well as build their network in the field of genomics and scientific research. … language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root … such resolution, this spatial transcriptomics data captured molecular information from both plant cells and fungal …
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