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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is … on Plant Sciences (CEPLAS), both funded by the Deutsche Forschungsgemeinschaft. F.M. salary was covered by the …
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … permafrost from the warming regional temperatures. For this reason, the U.S. Department of Energy is overseeing … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the Institut … address some of the most pressing challenges of our time. For more information, please visit  …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows … sustainable biomaterials, and developing high-throughput methods to reveal metabolic pathways that could ultimately …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … , a team of faculty and researchers describe a workforce development program for higher education that develops … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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JGI Scientists Pen Genome Watch Articles
… Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … their expertise in environmental genomics by writing for the column Genome Watch in  Nature Reviews Microbiology …
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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