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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … for habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly … of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our …
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Tracking the Origins of Methane-Producing Microbes
… Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … “This provided us with genetic evidence to tie together the evolutionary history of the different types of methanogenesis occurring … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … as “an unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … went on to explain that the JGI’s very first project — the revolutionary work of the human genome project, which spanned …
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … DNA is manually separated into a few different groups based on its density — DNA containing isotopes is “heavier” … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these … the recently published article, the authors provide a brief history of the field, describe the most commonly used …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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The JGI Data Portal: Improving User Experience
… “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, … product manager who is part of the joint JGI/Truss team. Based on Google Analytics data, the team noticed that a …
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