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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the … Relevant Links: Publication: Wint R et al. Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals …
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Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and Sekimoto et al . … question, despite of their well-designed sampling and analysis of their data at the time. Following the …
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with … “It’s 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I …
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Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
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Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year …
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Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
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Pinning Down a Piece of Photosynthesis
… that photosynthesizers share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes … a very complex CTRL+F search for this domain, looking for context clues that might point them toward the domain’s … facilities that we worked with are cutting edge in terms of analysis and the fascinating results that we managed to …
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