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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … whip up dozens of complex natural products, including new ones. The Impact In the past, natural products have been an …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … National Energy Research Scientific Computing (NERSC) has another supercomputer, Perlmutter that works at large scale. …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … JGI united the genomics expertise of three national labs in one long building at Walnut Creek, after countless … buildings to a new 4-story building 20 miles away in another city and county began more than three years ago. For …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC … in transposable elements or transposons that can move to another location in the genome. Many plant pathogens such as … development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program … campuses with this being our largest and most successful one. It’s proven to be a really good model for us that we … co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the past decade …
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New Tricks with Old Bones
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental … include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled laboratory automation, data …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … relationship with poplar … Fungal Datasets … Genome Inside: THE Bioenergy Tree …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to … call included algal genomics as a focus area, and one of the accepted proposals came from Chris Bowler of … more information on these ecologically relevant species. Another focus area was inter-organismal interactions, and …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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