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Uncovering associations between plant roots and fungi that can help … collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data … Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …

Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … on any proposals previously accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for … Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most …

Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high … because they’re very productive even in high heat while C3 crops have become less efficient at photosynthesis, a …

Machine learning approach significantly expands inovirus … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 … component of the prokaryotic virome associated with nearly all bacterial phyla across virtually every ecosystem.” …

… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … Gardens Are A Community Effort The common gardens began nearly a decade ago with a proposal from UT-Austin’s Tom …

… for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools … … PhD in Chemistry, Johns Hopkins University (2003) MS in Chemistry, Johns Hopkins University (2000) BS in … (1996) … List available on Google Scholar … Education … Publications …

Since joining the DOE Joint Genome Institute in 2016, Dr. … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. … of transcriptional machineries. Nat Commun. 2022 Jun 17;13(1):3502. Udwary DW, Otani H, Mouncey NJ. New keys to … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …

Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … and ecological metadata. Nucleic acids research Jan 2023 Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, … Sci Rep. 2013;3: 1656. … Education … Selected Publications …

Dr. Cole is interested in studying how plants interact with their environment. Prior to … of Cell Identity as an R package … Education … Selected Publications … Software …

Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new … metagenome binning software … Education … Selected Publications … Software …

… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the … of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …