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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … Simon Roux are part of a team that  developed CheckV , an automated tool to help researchers assess and improve the …
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Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Erratum: Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Mining Metagenomes for Cas Proteins
… Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … work also used resources at the National Energy Research Scientific Computing Center , a DOE Office of Science User …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … Diagram. The tool is hosted on the National Energy Research Scientific Computing Center’s (NERSC) SPIN environment and …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … understand ecosystem-wide processes. Summary geNomad is an annotation and classification framework that combines and … The U.S. Department of Energy Joint Genome Institute …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … work also used resources of the  National Energy Research Scientific Computing Center (NERSC) , another DOE Office of …
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