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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … first plants appeared on land, these algae had a genetic toolkit for multicellular growth with plant-like cell walls …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint … Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other systems exist. Investigating the …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Nikos Kyrpides
Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management … out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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