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A metagenomic perspective on the microbial prokaryotic genome census
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A single-cell genomics pipeline for environmental microbial eukaryotes
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DOE Metrics
Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 Total 700.0     … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sequenced the shrub willows through the  Community Science Program , using long-read sequencing to assemble the …
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … of Science User Facility, through its  Community Science Program in order to get  M. elongata and  I. europaea  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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Microbial species delineation using whole genome sequences
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Improving Microbial Genome Annotations in an Integrated Database Context
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