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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … genotypes by Dr. John Mullet; Dr. Tom Juenger and his postdoc Xiaoyu Weng from Univ. of Austin, who previously led …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … abundant bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … Ph.D. in Bioengineering, University of California, Berkeley Postdoctoral training in Biochemistry, University of …
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … data integration and modeling This three-day joint user meeting will feature insightful presentations, dynamic panel … registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI and EMSL are U.S. …
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