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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with … to get a single line of code working and get the desired final output. Being successful in my computational efforts …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… lab describes the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome … Genome Inside: THE Bioenergy Tree …
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … will include a mix of plenary talks, panel discussions, posters and networking sessions. Beyond providing an …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction …
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Integrating Experimentation with Data
… The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research … in bioenergy and environmental science. They provide the scientific community access to cutting-edge capabilities for … Click to view a downloadable copy of the sponsor prospectus …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led … to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library Construction … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … explained. “That is definitely material that the scientific community now can use further. Let’s say somebody …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … domain of unknown function.  First, they looked across the tree of life, doing a very complex CTRL+F search for this domain, … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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