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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … JGI-developed genetic engineering technique CRAGE lands the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab) … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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Effects of Polar Light Cycle on Microbial Food Web
… studies focused on the Southern Ocean have found that in winter months, when sunlight is nonexistent, the bacteria … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … Science Program. For most months each year, Ace Lake is covered in thick ice, with a combination of marine and …
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Dan Rokhsar
… over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, …
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Examples: Successful LOIs & Submissions
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … together to build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Texas and other southern locales did not survive the cold winter of 2019 at the most northern common garden in South … existing plantings, and then trying to leverage these discoveries to better understand how plants tolerate stresses …
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Nikos Kyrpides
Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … Achievement Award (2022) ASM’s USFCC/J. Roger Porter Award (2018) Honorary Doctorate from the Aristotle University of … Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … DAP-seq and multiDAP allows for ultra high throughput discovery of transcription factor binding sites across many …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for … and, if so, to what extent.  “These new groups were discovered not by cultivation, like the original methanogens …
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