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Pinning Down a Piece of Photosynthesis
… longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts that …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint … Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … roundtrip every day, conservatively estimated to be over 350,000 miles over 15 years). And for Ray’s prospective …
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Evolution of a Fungal Gene Expression Regulator
… least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … of the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Tracking the Origins of Methane-Producing Microbes
… that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold from just 205 genomes, redefining the phylogenetic tree of giant …
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Training the Next Generation of Talent
… which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to …
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community … Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. Many …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. S.C., B.K., and I.V.G. were supported in part by the …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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