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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and … that this tool, called CRISPR inhibition or CRISPRi, works (see the article Transcriptional control of  Clostridium … and use the data we generated to train machine learning models now publicly available for the research community,” …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of … on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This project represents part of … undergraduate interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… like tiny natural engineers with special skills to break down pollutants and recycle carbon. They were part of an … vary wildly from spring to spring. These biodiversity hotspots harbor specialized microbial communities living in … loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic …
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Plant Pan-Genomics Comes of Age
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