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Integrating Experimentation with Data
… to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities … characterization, imaging, and visualization, through a collaborative, peer-reviewed proposal process—enabling …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … sphagnum  genomes from plants selected by a team from Duke University, then tested for heat and pH stress by Oak Ridge …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected 40 samples from …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … in environmental genomics from around the globe through a collaborative network of researchers that we support through …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … The work conducted by the National Microbiome Data Collaborative ( https://ror.org/05cwx3318 ) is supported by …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … to S. Cheng and from the URPP Evolution in Action of the University of Zurich, grants from the Swiss National Science … Antoine Claraz Foundation and the Forschgungskredit of the University of Zurich (FK-20-089) to P.S. …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … The Blob reached southern California. Steven Hallam of the University of British Columbia was already collecting ocean … a former postdoctoral fellow in the Hallam lab now at the University of Southern Denmark, and colleagues at Hakai …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … team led by Daniele Armaleo, a biologist at Duke University, investigated Gray’s Cup lichen  (Cladonia grayi) …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot … Building upon these resources, KBase, a multi-institutional collaborative knowledge creation and discovery environment …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… didn’t really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, Davis. “The work with JGI was one …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence … in my office on the seventh floor of Stan­ley Hall at the University of California, Berkeley, when the phone rang. On …
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Building Sphagnum Genomic Resources
Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … In The ISME Journal, a team led by researchers from the University of Konstanz and the University of Vienna  reported recovering draft …
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