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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the … Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the …
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome …
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture
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Draft genome sequence of Mesonia hippocampi DSM 29568T isolated from the brood pouch of a diseased male seahorse.
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … We’ll hear more about CAM and Karolina’s quest in a future episode of our JGI podcast, Genome Insider. I’m Alison Takemura. See you next time. … The U.S. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program … JGI is our diverse workforce and our diverse collaborators around the world. That said, we recognize that workforce in …
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