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Expanding Virophage Diversity
… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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I-Min (Amy) Chen
… one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the … is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is … issues in microbiology.  A senior scientist at Lawrence Berkeley National Laboratory (Berkeley Lab), Woyke has led …
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From Textbook to Real World Applications
… students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in … Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … in the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … Woyke , Biology & Biochemistry category Some highlights from projects each of these researchers were involved in …
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David Goodstein
… at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the JGI … the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY M.S in Physics, Cornell University, … 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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