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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the mining … like it’s, it’s this unique time where the preceding 300 years, that change was not occurring at that pace, right. And then, hopefully, 3-400 years down the road we’ll have a steady state where we can …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from … biochemical reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ …
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DOE JGI Interns Share Their Summer Experiences
… here to check out photos of the interns. For this second year of the DOE JGI/University of California, Merced …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Forming Scientific Connections and Building Community
… interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan … – were selected to continue their research over the school year.   …
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Streamlining Regulon Identification in Bacteria
… assay with RNA sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces … and cellular differentiation. The tough part is identifying the set of genes associated with any particular … That work published in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and …
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