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Katherine Louie
… analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI scientists … of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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A Grass Model to Help Improve Giant Miscanthus
… the dynamics of gene expression as it grows back vigorously year after year (perenniality). The Impact Among the long-term aims for … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. … accessions and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at …
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Hiroshi Otani
… microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New …
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DOE JGI Interns Share Their Summer Experiences
… here to check out photos of the interns. For this second year of the DOE JGI/University of California, Merced …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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JGI Announces 2025 New Investigator Portfolio
… Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs … alpine soils to tropical glaciers.  Proposals are accepted year-round for this ongoing call; the next deadline for …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Doubling Down on Known Protein Families
… how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and … of new protein families had started to plateau in recent years, perhaps suggesting that scientists had “captured” …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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