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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at … funding of the JGI. There is no cost to the user and no granting of funds. …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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JGI Workshop at SIMB NP Meeting
… needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide … of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced Bruce … in the earth’s soils. While she admits that it “0.25% doesn’t seem like a lot (referring to the abundance of …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI … management and strategic objectives for the JGI’s data science, informatics and information technology (IT) … panel for the JGI’s Director, CIO, and Deputies. The IAC does not perform management functions, nor does it direct …
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Events
…  Learn about meetings the JGI is hosting:   … The JGI is represented at conferences year round; find out where …
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Biodesign
… team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, … Biology Informatics Group : a team that develops data science tools for workflow management and novel automations … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening … year we look for novel research projects — aligned with DOE missions and from PIs who have not led any … —  through the  New Investigator call under our Community Science Program.  Below find a list of the first 10 …
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