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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought … have a number of initiatives across several different campuses with this being our largest and most successful one. …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative … and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint … families to photosynthesis and discover gene functions that may be relevant to both algae and land plants.  Within the …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … foundational genetic information that crop breeders can use to improve sugarcane varieties and advance a sustainable … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …
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Tanja Woyke Elected to American Academy of Microbiology
… the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based … Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … to decode genomes of bacteria and archaea from previously understudied clades, establishing their evolutionary …
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Mapping the microbiome milieu
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … 2013 Nature paper , which uncovered nearly 30 major previously uncharted branches of the tree of life. A senior …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… switchgrass ( Panicum virgatum ), which has established 10 experimental gardens located in eight states spread … team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … environments. It also shows how environmental conditions may affect metabolic activity of microbiomes. This is key … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped …
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Promoting the Power of Viral Metagenomics
… have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like … of important questions such as which organisms the viruses may be targeting or infecting, how well the targeted …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the … discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the full …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… of California, Berkeley and Berkeley Lab, who discussed the exciting progress in gene editing made possible by … had a powerful tool,” Doudna said during her keynote. In 2012, Doudna published results indicating how CRISPR Cas-9 … to realistically implement. CRISPR-Cas9, Doudna said, may work better and be more cost-effective. “There are still …
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The Power of One, Amplified
… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … of social media networks where one social media group may have a relatively constrained set of friends, while …
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