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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we … research. Contact If you have questions or would like access to the EcoFAB Discord server, which has channels for …
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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers … throughput. “The JGI synthesis project was the spark that started it all,” Blaby-Haas said. A more apt name for a Jane … in complementary ways to investigate this protein domain. Scientists at Brookhaven National Laboratory’s NSLS-II used …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying … opens up a new avenue to explore for efficient biofuel production. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy … and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as wheat, peanut, oat, banana, potato, etc., switchgrass …
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Three Join the JGI User Executive Committee
… the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a research group investigating the … has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and brings … on JGI policies and practices that affect users and their access to technical capabilities JGI offers, as well as …
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Cracking the Secrets of the Diatom’s Shell
… of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, biologists at both UC Berkeley and Lawrence Berkeley National Laboratory, aim …
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From Competition to Cooperation
… and how the mutualistic associations allow host plants, such as candidate  bioenergy feedstock crops, to acquire … . The work builds upon several papers and workshops, starting with the first mycorrhizal genome sequence … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… The planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … biofuels ), enhance plant health, cause diseases, and produce antibiotics. Still, the team estimates that genomic …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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Next generation sequencing data of a defined microbial mock community
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest … in interactions with plants, and as drivers of methane production, nutrient cycling, greenhouse gas emissions, and … is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for …
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