Search

… soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science … time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been … walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which … in moving toward functional genomics studies to learn more about the inner workings of plant-host and …

Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …

JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …

… their schedules were filled with trainings that they later reported were incredibly valuable to their careers going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …

Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has …

Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair … Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … reference sequence of the complex switchgrass genome , using samples from common gardens growing across the …

… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …

… farmers around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted … collection sourced from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology …

… microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from … microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …

… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the …

The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including sunlight, carbon and water, to convert … provided the Erb lab with enzymes that led to a previously reported synthetic CO2-fixation pathway called the “CETCH …