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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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JGI Hosts GPU Hackathon in May
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen hackathons … to the Team Proposal tab to submit. For more information about the 2019 GPU Hackathons, go to:  …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode … and press a button to build a model from our database of mappings between biochemical reactions and annotations. We …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … imaging for in situ kinetic histochemistry. Scientific reports, 3(1), 1656. Rübel, O., Greiner, A., Cholia, S., …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding … Community Science Program proposal call are due in Spring 2022. Byline: Massie S. Ballon       … The U.S. Department …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … that will help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of … of years evolving tactics against potential threats. “Because plants can’t run away, they’ve evolved these really …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … giant viruses from environmental sequences across the globe, then using these sequences to make inferences about …
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Decoding Yellowstone’s Microbial Mats
… adopted new technologies, and made a few discoveries about the microbial mat denizens.  …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and the National Natural Science Foundation of China (32022006) to S. Cheng and from the URPP Evolution in Action …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … diversification and microbial diversity. Learn more about this work and further details on our Genomic …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of …
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