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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this …
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Access to Rock Star Scientists
… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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A Model System for Perennial Grasses
… model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close … including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the …
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Tanja Woyke
… which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … as well as our Deputy of User Programs. Click to learn more about the program's areas of focus, major initiatives and …
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Mapping the Earth’s Hidden Fungal Kingdom
… To put this evolutionary timescale in perspective, the genus Aspergillus has been evolving for 82 million years, … and ancient origins, fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those … reviews about 200 publications linking evolutionary history and innovations across different classes of fungi. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… tap into the diverse talent that UC Merced has is tremendous for us, and we are very grateful for this opportunity.” … has existed really for a significant part of UC Merced’s history and already in its five years has made a really … to seeing this internship program continue and I’m excited about what it will bring to the future of JGI, UC Merced and …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  … the recently published article, the authors provide a brief history of the field, describe the most commonly used …
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Biodesign
… The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, … assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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