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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying these engineered ecosystems across various biological contexts. The program fosters intimate, … EcoFAB 2025 Conference is organized by the EcoFAB Steering Committee, dedicated to advancing standardized fabricated …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and …
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Examples: Successful LOIs & Submissions
… Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … insights in lignin biosynthetic pathway edited populus … of simplified soil communities with high and low carbon use efficiency across differing moisture treatments …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working … the lead of the infrastructure team and the chair of the Cluster Advisory Group (CAG), he sees his role as using the …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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