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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral … sample — a small proportion of the sample’s billions of bacterial and archaeal cells — and detected the virus in 34 …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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SIPs with Standards
… (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … and more insightful, for the future of studying microbial communities.   …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families … Open Green Genomes project. “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Streamlining Regulon Identification in Bacteria
… one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are made up of a core enzyme … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions
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Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
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Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
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Landscape topography structures the soil microbiome in arctic polygonal tundra
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