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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthetic algae. But human-induced climate change , a new study suggests, is displacing these important cold-water … warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… in Mono County, California, scientists have used sequencing methods for the first time to comprehensively characterize … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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David Goodstein
… the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY M.S in Physics, Cornell University, … Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … et al., 2020.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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John Vogel
… on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … regulation, abiotic stress tolerance, and the mechanisms by which plants interact with their microbiomes. In … and depletion of soil metabolites by a model grass New Phytologist 222: 1149-1160 …
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Gene Expression: From On-Off Switch to Dial
… expression, when used in addition to traditional methods, can offer scientists a more colorful palette of … on, scientists can determine the level of gene expression by the gradations. The Impact Metabolic engineering could … approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to …
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JGI announces 2024 Functional Genomics awardees
… sustainable biomaterials, and developing high-throughput methods to reveal metabolic pathways that could ultimately enable new or more efficient biotechnologies.  Below find a list of …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to … metagenome and metatranscriptome assembly, Hadoop based on sequence analysis framework, etc. For example, this group …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Nigel Mouncey
… as a senior research scientist at Roche Vitamins, Inc. in New Jersey and DSM Nutritional Products in Switzerland, and … insecticides, fungicides, platform chemicals, cosmetics and new crop traits. Dr. Mouncey has successfully built … for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …
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iPHoP: A Matchmaker for Phages and their Hosts
… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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