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Virulence of banana wilt-causing fungal pathogen Fusarium oxysporum tropical race 4 is mediated by nitric oxide biosynthesis and accessory genes
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Picking Up Threads of Cotton Genomics
… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … it, which exact base or series of bases you have to alter.’ Why should we invest in something that may not be an …
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Mapping the Earth’s Hidden Fungal Kingdom
… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom … species lies an even thornier problem: The genomes already sequenced don't adequately capture the vast nature of fungal …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… soil. These fungi help shape a forest’s ecology. They store carbon and cycle key nutrients like nitrogen and … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor …
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Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
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Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts
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JGI-USCCN Strain Sequencing Opportunity
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s … also approved to learn more about the roles of diatoms in carbon fixation and in aquatic food webs. Finally,  …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Pinning Down a Piece of Photosynthesis
… new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to produce knock-out …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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